Presentations from SOFG 2004
| Presenter: |
Title: |
Format and Size: |
| Michael Ashburner |
Extending to the GO model |
[PPT - 2219kb]
[PDF - 2316kb] |
| Judith Blake |
Functional Genome Annotation Using Controlled Vocabularies |
[PPT - 3307kb]
[PDF - 10267kb] |
| Olivier Bodenreider |
Gene Ontology-driven similarity for gene expression correlation analysis |
[PPT - 727kb]
[PDF - 4635kb] |
| Roger Brown |
Pathology Terminology - Issues and Solutions |
[PPT - 10200kb]
[PDF - 36281kb] |
| Linair Maria Campos |
Supporting Systematic Ontology Creation and Reuse with OntoGuide |
[PPT - 570kb]
[PDF - 3367kb] |
| Michael Cary and Joanne Luciano |
BioPAX A Data Exchange Format for Biological Pathways |
[PPT - 1961kb]
[PDF - 2150kb] |
| Chris Catton |
Experiences In Building An Ontology-Driven Image Database For Biologists |
[PPT - 2426kb]
[PDF - 3981kb]
Image search example [ZIP - 2431kb] |
| Duncan Davidson |
Describing phenotype: towards a minimum standard |
[PPT - 880kb]
[PDF - 16504kb] |
| G. Despacio-Reyes |
Ontology Development And Application For International Crop Research |
[PPT - 1085kb]
[PDF - 4254kb] |
| Peter D’Eustachio |
Ontologies and Knowledgebases: the Reactome Example |
[PPT - 914kb]
[PDF - 1093kb] |
| Eric Deutsch |
Developing a Data Standard for Gene Expression Localization Experimental Data |
[PPT - 2594kb]
[PDF - 1988kb] |
| Karen Eilbeck |
Introduction to the Sequence Ontology |
[PPT - 214kb]
[PDF - 349kb] |
| Marcus Ennis |
ChEBI A Dictionary of Chemical Entities with an Associated Ontology |
[PPT - 1300kb]
[PDF - 851kb] |
| Gilberto Fragoso |
The NCI Thesaurus, Overview and Utilization |
[PPT - 1231kb]
[PDF - 7023kb] |
| John H. Gennari |
Structural Phenotype: The foundation for connecting distributed bioinformatics knowledge sources |
[PDF - 1354kb] |
| Carole Goble |
The Capulets and Montagues A plague on both your houses? |
[PPT - 9328kb]
[PDF - 45420kb] |
| Terry Hayamizu |
The Anatomical Dictionary for the Adult Mouse: A Tool for Annotating and Integrating Data |
[PPT - 665kb]
[PDF - 562kb] |
| Midori Harris, John Day-Richter and Helen Parkinson |
SOFG Epilogue, a comedy of errors in twelve slides |
[PPT - 305kb]
[PDF - 199kb] |
| Win Hide |
Application of eVOC ontologies for cross platform normal gene expression analysis and integration with text mining |
[PPT - 3219kb]
[PDF - 896kb] |
| Minoru Kanehisa |
Ontologies and the KEGG |
[PDF - 2000kb] |
| Phillip Lord |
In this demonstration, the use of protege as an editor for OWL based
ontologies was demonstrated. More information can be found at the
following links:
http://protege.stanford.edu/plugins/owl/
http://www.co-ode.org
http://protege.stanford.edu/plugins/owl/documentation.html
The demonstration itself was based on a subset of the Protege OWL
Tutorial, a full version of which is available.
http://www.co-ode.org/resources/tutorials/ProtegeOWLTutorial.pdf |
|
| Yves A. Lussier |
Computational Ontologies for High Throughput Visualization and Analysis of the Phenome |
[PPT - 5979kb]
[PDF - 10403kb] |
| Matt Mailman |
Utilization of Existing Bio-Ontologies for the Annotation of Phenotype Data |
[PPT - 74kb]
[PDF - 51kb] |
| Inderjeet Mani |
PRONTO: A Large-scale Machine-induced Protein Ontology |
[PPT - 303kb]
[PDF - 1514kb] |
| Mark A. Musen |
Protégé 3.0: An ontology managment system for both the Montagues and the Capulets |
[PPT - 665kb]
[PDF - 699kb] |
| Karim Nashar |
Representing Integrated Biological Domains In OWL |
[PPT - 315kb]
[PDF - 461kb] |
| Stuart Nelson |
Unified Medical Language System, Medical Subject Headings, and Bibliographic Retrieval |
[PPT - 910kb]
[PDF - 2953kb] |
| Anastasia Nikolskaya |
Complementing Gene Ontology With Pirsf Classification-based Protein Ontology |
[PPT - 1014kb]
[PDF - 1186kb] |
| Chintan O. Patel |
Re-representing Biomedical Ontologies using the Web Ontology Language - A Checklist |
[PPT - 215kb]
[PDF - 325kb] |
| Kai Runte |
The HUPO Proteomics Standards Initiative - Ontologies development for Proteomics |
[PPT - 3742kb]
[PDF - 1071kb] |
| Antonio Sanfilippo |
Aligning the Gene Ontologies |
[PPT - 1392kb]
[PDF - 6731kb] |
| Chris Stoeckert |
The MGED Ontology |
[PPT - 4508kb]
[PDF - 4313kb] |
| Michael D. Waters |
Standards and Ontologies for Toxicogenomics |
[PPT - 5607kb]
[PDF - 24173kb] |
| Chris Wroe |
Theory of Ontologies |
[PPT - 5009kb]
[PDF - 4739kb] |
| Barry Zeeberg |
MatchMiner, GoMiner, and High-Throughput GoMiner |
[PPT - 5585kb]
[PDF - 2442kb] |
